Simpleaffy包
WebbOn 9/24/2012 5:14 PM, SAIC [guest] wrote: > Hi, > > I am trying to perform QC on a Mouse Gene 1.0 ST Array using simpleaffy(). However, simpleaffy is not recognizing the cdf file associated with the array. According to the instructions in the simpleaffy() vignette, the cdf file has been renamed to have an extension of .qcdef and has been placed in the R … Webb16 maj 2024 · 3 使用 simpleaffy 包进行质量控制. simpleaffy整合了许多affy包常用的功能，剔除了不少基本用不着的功能，新增了质量控制的功能。这里只讲作质控图的流程。 …
Simpleaffy包
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Webb13 jan. 2024 · Warning message: In .inet_warning(msg) : package 'simpleaffy' is not available for Bioconductor version '3.14' And if you go to the release announcement for Bioc 3.13, and go waay to the bottom under 'Deprecated and Defunct Packages' you can see that simpleaffy got removed.
Webb28 nov. 2024 · affy包的函数为computeExprSet，需要注意的是computeExprSet函数除需要指定统计方法外还需要指定PM校正的方式： computeExprSet (x, pmcorrect.method, … Webb15 sep. 2005 · Simpleaffy is a BioConductor package that provides access to a variety of QC metrics for assessing the quality of RNA samples and of the intermediate stages of …
WebbThis paper describes the Comp2ROC package implemented in the R programming language. The theoretical contextualization behind this package are introduced including a general introduction to ROC ... http://www.news.cn/2024-04/13/c_1129520608.htm
Webb2 maj 2024 · 需要先安装 simpleaffy 包， simpleaffy 包提供了处理 CEL 数据的程序，可以对 CEL 数据进行标准化同时导入实验信息（即前一步中整理好的实验信息文本文件内 …
WebbHello, I am trying to use simpleaffy to generate some QC information. When I load simpleaffy I am getting this error: Warning messages: 1: found methods to import for function as.list but not the generic itself 2: found methods to import for function eapply but not the generic itself > Also if I proceed with the processing, following the exact … incarcerated and supervised offendersWebblibrary(simpleaffy) help(haveQCParams) Run Any scripts or data that you put into this service are public. Nothing simpleaffy documentationbuilt on Nov. 8, 2024, 11:09 p.m. R Package Documentation rdrr.io homeR language documentationRun R code online Browse R Packages CRAN packagesBioconductor packagesR-Forge packagesGitHub packages incarcerated artworkWebbA white space delimited file suitable for reading as a data.frame. The first column (with no column name) contains the names (or paths to) the .CEL files to read. Remaining … in chemical adsorptionWebbBut I need to use another QC method from yaqcaffy package (spike controls for lys, phe, thr, dap) and it's not possible to change any file in yaqc library I think.? For another chip, U133A X3P I've not found any information about QC. I suppose this chip is very similar to hgu133plus2 chip but I'm not sure. incarcerated after disposition of chargesWebb29 sep. 2024 · For this, I have to install "simpleaffy" package. I am using the following code for the installation of "simpleaffy": BiocManager::install (version="3.15") BiocManager::install ("simpleaffy") suppressPackageStartupMessages (library (simpleaffy)) But after running this code, in chemical equation what are reactantsWebbSimpleaffy does not know the QC parameters for this array type. See the package vignette for details about how to specify QC parameters manually. Calls: qc -> qc -> qc.affy -> setQCEnvironment Execution halted I have downloaled the drosophila2cdf package and then, according to the vignette and the forum mails I ve seen so far, I should create a … in chemical digestionWebbDOI: 10.18129/B9.bioc.simpleaffy Very simple high level analysis of Affymetrix data. Bioconductor version: Release (3.6) Provides high level functions for reading Affy .CEL files, phenotypic data, and then computing simple things with it, such as t-tests, fold changes and the like. Makes heavy use of the affy library. incarcerated angels